Kit-Free DNA Extraction from Hair (DTT Protocol)
DNA Extraction
Procedure
Step 1.
Collect hair sample into a 1.5 ml microcentrifuge tube.
Step 2.
Add 500 μl digestion buffer.
Step 3.
Add 40 μl of 1M DTT.
Step 4.
Add 15 μl of 10 mg/ml proteinase K.
Step 5.
Vortex briefly.
Step 6.
Incubate overnight at 56 °C.
12 hr
@ 56 °C
Step 7.
Vortex briefly
Step 8.
Add another 40μl of 1M DTT.
Step 9.
Add another 15 μl of 10mg/ml proteinase K.
Step 10.
Mix gently by inversion.
Step 11.
Incubate at 60°C for 2 h or until hair has dissolved completely.
2 hr
@ 60 °C
Step 12.
Add an equal volµme of chloroform:isoamyl alcohol.
Step 13.
Centrifuge at 10,000 g for 10 minutes.
10 min
@ 10000 𝘨
Step 14.
Transfer the upper aqueous layer into a new microcentrifuge tube.
Step 15.
Add 10 μl of 10 mg/ml RNaseA.
Step 16.
Incubate at 37 °C for 30 minutes.
30 min
@ 37 °C
Step 17.
Add an equal volµme of chloroform:isoamyl alcohol.
Step 18.
Mix gently by inverting the tube for a few minutes.
Step 19.
Centrifuge at 10,000g for 10 minutes.
10 min
@ 10000 𝘨
Step 20.
Transferred upper aqueous layer into a new microcentrifuge tube.
Step 21.
Add twice the volµme of cold isopropanol and 1/10 volµme of 3M sodiµm acetate.
Step 22.
Chill at 20°C for 1 hour.
1 hr
@ 20 °C
Step 23.
Centrifuge at 10,000 g for 10 minutes.
10 min
@ 10000 𝘨
Step 24.
Discard supernatant.
Step 25.
Add 250 μl 70% ethanol
Step 26.
Centrifuge at 10,000 g for 10 minutes.
10 min
@ 10000 𝘨
Step 27.
Discard supernatant.
Step 28.
Invert uncapped to air-dry the pellet.
Step 29.
Resuspend in 50 μl water.
Required recipes
1M DTT
Recipe calculator ·
Prepares solution at target volume
Step 1.
Prepare ingredients.
DTT (dithiothreitol)
7.7125
g
(1 M)
Step 2.
Adjust final volume to 50 mL with water.
Digestion Buffer, DTT extraction
Recipe calculator ·
Prepares solution at target volume
Step 1.
Prepare ingredients
1M Tris (pH 8)
0.5
mL
(10 mM from 1 M stock)
0.5M EDTA STOCK
1
mL
(10 mM from 0.5 M stock)
5M NaCl Stock
0.5
mL
(50 mM from 5 M stock)
10% SDS
2.5
mL
(0.5 % w/v from 10 % w/v stock)
Step 2.
Adjust final volume to 50 mL with water.
Used in step 1
1M Tris (pH 8)
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Weigh out the Tris and add to a media bottle.
Tris Base
12.114
g
Step 2.
Fill media bottle to with ~80% target volume with distilled water.
Step 3.
Add a magnetic stirrer and place on a stirring plate to mix the solution.
Step 4.
Use a pH meter to measure pH. Slowly add concentrated hydrochloric acid (HCl) solution using a Pasteur pipette to reduce the pH to 8.0.
Be careful not to add too much at a time, since the pH will change rapidly.
Step 5.
Once the desired pH has been reached, bring to final volume using distilled water.
Step 6.
Bring final volume to 100 mL with water.
Used in step 1
0.5M EDTA STOCK
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Prepare ingredients.
EDTA (Ethylenediaminetetraacetic acid)
7.306
g
Step 2.
Bring final volume to 50 mL with water.
Used in step 1
5M NaCl Stock
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Prepare ingredients.
Sodium Chloride
14.61
g
Step 2.
Bring final volume to 50 mL with water.
Used in step 1
10% SDS
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Prepare ingredients.
Sodium Lauryl Sulfate
5
g
Step 2.
Bring final volume to 50 mL with water.
Chloroform-Isoamyl Alcohol 24:1 (V/V)
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Prepare ingredients.
Chloroform
48
mL
Isoamyl Alcohol
2
mL
5M Potassium acetate
Recipe calculator ·
Scales ingredients to target volume
Step 1.
Prepare ingredients.
Potassium Acetate
24.535
g
Step 2.
Bring final volume to 50 mL with water.